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1

No evidence for extensive horizontal gene transfer in the genome of the tardigrade Hypsibius dujardini

Koutsovoulos, Georgios, Kumar, Sujai, Laetsch, Dominik R., Stevens, Lewis, Daub, Jennifer, Conlon, Claire, Maroon, Habib, Thomas, Fran, Aboobaker, Aziz A., Blaxter, Mark

Journal:

Proceedings of the National Academy of Sciences

Year:

2016

Language:

english

File:

PDF, 1.28 MB

english, 2016

2

Comparative genomics of the tardigrades Hypsibius dujardini and Ramazzottius varieornatus

Yoshida, Yuki, Koutsovoulos, Georgios, Laetsch, Dominik R., Stevens, Lewis, Kumar, Sujai, Horikawa, Daiki D., Ishino, Kyoko, Komine, Shiori, Kunieda, Takekazu, Tomita, Masaru, Blaxter, Mark, Arakawa,

Journal:

Year:

2017

Language:

english

File:

PDF, 8.89 MB

english, 2017

3

High genetic diversity in the Dirofilaria repens species complex revealed by mitochondrial genomes of feline microfilaria samples from Narathiwat, Thailand

Yilmaz, E., Wongkamchai, S., Ramünke, S., Koutsovoulos, G. D., Blaxter, M. L., Poppert, S., Schaper, R., von Samson-Himmelstjerna, G., Krücken, J.

Journal:

Transboundary and Emerging Diseases

Year:

2018

Language:

english

File:

PDF, 482 KB

english, 2018

4

iPhy: an integrated phylogenetic workbench for supermatrix analyses

Martin O Jones, Georgios D Koutsovoulos, Mark L Blaxter

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 2.34 MB

english, 2011

5

Genomics and transcriptomics across the diversity of the Nematoda

M. BLAXTER, S. KUMAR, G. KAUR, G. KOUTSOVOULOS, B. ELSWORTH

Journal:

Parasite Immunology

Year:

2012

Language:

english

File:

PDF, 1.27 MB

english, 2012

6

Silencing of Germline-Expressed Genes by DNA Elimination in Somatic Cells

Wang, Jianbin, Mitreva, Makedonka, Berriman, Matthew, Thorne, Alicia, Magrini, Vincent, Koutsovoulos, Georgios, Kumar, Sujai, Blaxter, Mark L., Davis, Richard E.

Journal:

Developmental Cell

Year:

2012

Language:

english

File:

PDF, 66 KB

english, 2012

7

The genome ofRomanomermis culicivorax: revealing fundamental changes in the core developmental genetic toolkit in Nematoda

Schiffer, Philipp H, Kroiher, Michael, Kraus, Christopher, Koutsovoulos, Georgios D, Kumar, Sujai, R Camps, Julia I, Nsah, Ndifon A, Stappert, Dominik, Morris, Krystalynne, Heger, Peter, Altmüller, Ja

Journal:

Year:

2013

Language:

english

File:

PDF, 445 KB

english, 2013

8

Phylogenomics and Analysis of Shared Genes Suggest a Single Transition to Mutualism in Wolbachia of Nematodes

Comandatore, F., Sassera, D., Montagna, M., Kumar, S., Koutsovoulos, G., Thomas, G., Repton, C., Babayan, S. A., Gray, N., Cordaux, R., Darby, A., Makepeace, B., Blaxter, M.

Journal:

Genome Biology and Evolution

Year:

2013

Language:

english

File:

PDF, 327 KB

english, 2013

9

The evolution of parasitism in Nematoda

BLAXTER, MARK, KOUTSOVOULOS, GEORGIOS

Journal:

Year:

2015

Language:

english

File:

PDF, 330 KB

english, 2015

10

The genome of the heartworm, Dirofilaria immitis, reveals drug and vaccine targets

Godel, C., Kumar, S., Koutsovoulos, G., Ludin, P., Nilsson, D., Comandatore, F., Wrobel, N., Thompson, M., Schmid, C. D., Goto, S., Bringaud, F., Wolstenholme, A., Bandi, C., Epe, C., Kaminsky, R., Bl

Journal:

The FASEB Journal

Year:

2012

Language:

english

File:

PDF, 237 KB

english, 2012

11

Toward 959 nematode genomes

Kumar, Sujai, Koutsovoulos, Georgios, Kaur, Gaganjot, Blaxter, Mark

Journal:

Year:

2012

Language:

english

File:

PDF, 507 KB

english, 2012

12

Palaeosymbiosis Revealed by Genomic Fossils of Wolbachia in a Strongyloidean Nematode

Koutsovoulos, Georgios, Makepeace, Benjamin, Tanya, Vincent N., Blaxter, Mark, Feschotte, Cédric

Journal:

Year:

2014

Language:

english

File:

PDF, 1.42 MB

english, 2014

13

A single chromosome assembly ofBacteroides fragilisstrain BE1 from Illumina and MinION nanopore sequencing data

Risse, Judith, Thomson, Marian, Patrick, Sheila, Blakely, Garry, Koutsovoulos, Georgios, Blaxter, Mark, Watson, Mick

Journal:

Year:

2015

Language:

english

File:

PDF, 753 KB

english, 2015

14

Formin Is Associated with Left-Right Asymmetry in the Pond Snail and the Frog

Davison, Angus, McDowell, Gary S., Holden, Jennifer M., Johnson, Harriet F., Koutsovoulos, Georgios D., Liu, M. Maureen, Hulpiau, Paco, Van Roy, Frans, Wade, Christopher M., Banerjee, Ruby, Yang, Feng

Journal:

Current Biology

Year:

2016

Language:

english

File:

PDF, 1.79 MB

english, 2016

15

Toward Universal Forward Genetics: Using a Draft Genome Sequence of the Nematode Oscheius tipulae To Identify Mutations Affecting Vulva Development

Besnard, Fabrice, Koutsovoulos, Georgios, Dieudonné, Sana, Blaxter, Mark, Félix, Marie-Anne

Journal:

Year:

2017

Language:

english

File:

PDF, 1.59 MB

english, 2017

16

Sex- and Gamete-Specific Patterns of X Chromosome Segregation in a Trioecious Nematode

Tandonnet, Sophie, Farrell, Maureen C., Koutsovoulos, Georgios D., Blaxter, Mark L., Parihar, Manish, Sadler, Penny L., Shakes, Diane C., Pires-daSilva, Andre

Journal:

Current Biology

Year:

2017

Language:

english

File:

PDF, 2.19 MB

english, 2017

17

The gene regulatory program of Acrobeloides nanus reveals conservation of phylum-specific expression

Schiffer, Philipp H., Polsky, Avital L., Cole, Alison G., Camps, Julia I. R., Kroiher, Michael, Silver, David H., Grishkevich, Vladislav, Anavy, Leon, Koutsovoulos, Georgios, Hashimshony, Tamar, Yanai

Journal:

Proceedings of the National Academy of Sciences

Year:

2018

Language:

english

File:

PDF, 1.87 MB

english, 2018

18

Reinforcement learning produces dominant strategies for the Iterated Prisoner’s Dilemma

Harper, Marc, Knight, Vincent, Jones, Martin, Koutsovoulos, Georgios, Glynatsi, Nikoleta E., Campbell, Owen, Deng, Yong

Journal:

Year:

2017

Language:

english

File:

PDF, 22.61 MB

english, 2017

19

Blobology: exploring raw genome data for contaminants, symbionts and parasites using taxon-annotated GC-coverage plots

Kumar, Sujai, Jones, Martin, Koutsovoulos, Georgios, Clarke, Michael, Blaxter, Mark

Journal:

Frontiers in Genetics

Year:

2013

Language:

english

File:

PDF, 1.51 MB

english, 2013

20

Population genomics supports clonal reproduction and multiple independent gains and losses of parasitic abilities in the most devastating nematode pest

Koutsovoulos, Georgios D., Marques, Eder, Arguel, Marie‐Jeanne, Duret, Laurent, Machado, Andressa C.Z., Carneiro, Regina M.D.G., Kozlowski, Djampa K., Bailly‐Bechet, Marc, Castagnone‐Sereno, Philippe,

Journal:

Evolutionary Applications

Year:

2019

Language:

english

File:

PDF, 3.60 MB

english, 2019

21

Polyphenism of a novel trait integrated rapidly evolving genes into ancestrally plastic networks

Casasa, Sofia, Biddle, Joseph F, Koutsovoulos, Georgios D, Ragsdale, Erik J, Ruvinsky, Ilya

Journal:

Molecular Biology and Evolution

Year:

2020

File:

PDF, 2.26 MB

2020

22

Genome structure and content of the rice rootâknot nematode ( Meloidogyne graminicola )

Phan, Ngan Thi, Orjuela, Julie, Danchin, Etienne G. J., Klopp, Christophe, PerfusâBarbeoch, Laetitia, Kozlowski, Djampa K., Koutsovoulos, Georgios D., LopezâRoques, CÃ©line, Bouchez, Olivier, Zahm

Journal:

Ecology and Evolution

Year:

2020

File:

PDF, 1.05 MB

2020

23

Genome assembly and annotation of Meloidogyne enterolobii, an emerging parthenogenetic root-knot nematode

Koutsovoulos, Georgios D., Poullet, Marine, Elashry, Abdelnaser, Kozlowski, Djampa K. L., Sallet, Erika, Da Rocha, Martine, Perfus-Barbeoch, Laetitia, Martin-Jimenez, Cristina, Frey, Juerg Ernst, Ahre

Journal:

Scientific Data

Year:

2020

File:

PDF, 1.69 MB

2020